| #410 |
REST based interface for Annotations, Users, Journals, Issues. |
amit |
None |
critical |
enhancement |
|
06/20/07 |
| #515 |
develop a proper way to include freemarker templates on a per virtual journal basis |
stevec |
None |
critical |
defect |
|
07/31/07 |
| #653 |
trackback spam filter is too conservative |
russ |
|
critical |
enhancement |
|
09/20/07 |
| #675 |
Admin application needs to handle journals better. |
amit |
|
critical |
enhancement |
dragisak |
10/01/07 |
| #724 |
automate volume/issue collections on ingest |
rich |
|
critical |
task |
dragisak |
12/17/07 |
| #854 |
Ambra Webapp Integration Tests |
amit |
|
critical |
task |
dragisak |
03/19/08 |
| #910 |
Fix and rework user handling |
ronald |
|
critical |
defect |
dragisak |
04/14/08 |
| #919 |
support external template sets |
russ |
0.9.3_rc2 |
critical |
enhancement |
dragisak |
04/23/08 |
| #972 |
standardize parameter names for actions |
russ |
|
critical |
task |
dragisak |
06/19/08 |
| #1034 |
Remove all TQL queries in Ambra |
amit |
|
critical |
defect |
ronald |
10/08/08 |
| #1108 |
promoted a note to a formal correction and the body was eaten |
russ |
0.9.3_rc2 |
critical |
clarification |
russ |
02/10/09 |
| #1197 |
unable to order volumes withing a journal |
npeterson |
|
critical |
clarification |
npeterson |
03/18/09 |
| #1269 |
publishing articles is slow |
russ |
0.9.3_rc2 |
critical |
defect |
wtoconnor |
04/23/09 |
| #66 |
Wiki page to articles for various interesting applications (RDF Abstract, language translation, etc.) |
amit |
None |
high |
enhancement |
rich |
06/14/06 |
| #467 |
Remove Publishing application RDF dependency on Topaz URI RDF namespace. |
amit |
None |
high |
defect |
dragisak |
07/09/07 |
| #605 |
return user to origination journal after createNewUser or editProfile |
russ |
None |
high |
enhancement |
wtoconnor |
08/24/07 |
| #614 |
Email address(es) specified for correspondence with article's creators is not being migrated or ingested |
ebrown |
|
high |
task |
rich |
08/27/07 |
| #690 |
pull image attribution info from the cover image article and display on TOC page |
russ |
|
high |
enhancement |
wtoconnor |
10/11/07 |
| #783 |
Correction annotations outside of <body> element. |
rich |
|
high |
task |
josowski |
02/11/08 |
| #870 |
annotation in numbered list messes up formatting |
russ |
0.9.3_rc2 |
high |
defect |
josowski |
03/25/08 |
| #891 |
genericize article delete - expect the article zip filename to match the doi suffix, rather than removing the string "journal" |
russ |
None |
high |
enhancement |
rich |
04/03/08 |
| #996 |
disallow text selection based article annotations for text adjacent to figures and tables |
jkirton |
0.9.3_rc2 |
high |
clarification |
rich |
07/23/08 |
| #1039 |
Use Composite View Pattern / Tiles in Ambra |
dragisak |
|
high |
task |
dragisak |
10/17/08 |
| #1061 |
Move generation of xref xml blob outside of Ambra. |
amit |
|
high |
defect |
dragisak |
12/03/08 |
| #1184 |
Updated the anchor codes for Article Blurbs |
josowski |
|
high |
enhancement |
rich |
03/18/09 |
| #1216 |
ONE homepage timeout |
rich |
|
high |
clarification |
rich |
03/22/09 |
| #1274 |
serialization errors in 0.9.3 |
russ |
0.9.3_rc2 |
high |
defect |
wtoconnor * |
04/28/09 |
| #1286 |
Notes Across Different Sections of Text Should Not Be Allowed |
npeterson |
0.9.3_rc2 |
high |
defect |
josowski |
04/29/09 |
| #1303 |
deleting a volume in admin panel orphans the issues |
russ |
|
high |
defect |
npeterson |
05/11/09 |
| #1304 |
UnhandledException(PLoSMedicine)> max(1, startPage - 9) is undefined |
rich |
0.9.3_rc2 |
high |
defect |
josowski |
05/11/09 |
| #1305 |
Blog links missing |
npeterson |
0.9.3_rc2 |
high |
clarification |
rich |
05/11/09 |
| #420 |
logging: bad article ID should give 404, not site error |
russ |
None |
medium |
enhancement |
ssterling |
06/22/07 |
| #440 |
Rating content model need fixing. |
amit |
|
medium |
defect |
dragisak |
07/04/07 |
| #502 |
Add references (cited articles etc.) to the article feed data |
russ |
|
medium |
enhancement |
wtoconnor |
07/25/07 |
| #509 |
footnote links for figures with footnotes don't work (also, footnote links are showing the rid instead of the footnote) |
russ |
None |
medium |
defect |
rich |
07/27/07 |
| #517 |
group author name missing from "email this article" template |
russ |
None |
medium |
defect |
wtoconnor |
08/01/07 |
| #539 |
Journal definition via a XML file. |
amit |
None |
medium |
task |
rich |
08/13/07 |
| #593 |
group authors do not show up in feed |
russ |
|
medium |
defect |
wtoconnor |
08/22/07 |
| #600 |
handle multiple abstracts correctly on ingest |
stevec |
|
medium |
task |
dragisak |
08/22/07 |
| #641 |
bad behavior when user tries to annotate in acknowledgement section illegal area |
russ |
|
medium |
defect |
josowski |
09/18/07 |
| #718 |
Ambra should register a TemplateExceptionHandler to avoid Exception traces as Results in Templates |
jsuttor |
|
medium |
defect |
dragisak |
12/11/07 |
| #858 |
cache search |
russ |
|
medium |
enhancement |
wtoconnor |
03/20/08 |
| #859 |
placing a note directly on a reference link breaks the link |
russ |
|
medium |
defect |
josowski |
03/20/08 |
| #930 |
handle site-wide overrides for css, javascript, and image files |
russ |
0.9.3_rc2 |
medium |
enhancement |
|
05/06/08 |
| #940 |
Verify that ambra-theme is up to date and also only maintain copies of what we changed, |
pradeep |
0.9.3_rc2 |
medium |
task |
dragisak |
05/15/08 |
| #990 |
Invalid annotation URI supplied to listReplyAction |
pradeep |
|
medium |
defect |
josowski |
07/17/08 |
| #1007 |
article "linkback" URL on listThread.action uses deprecated fetchArticle.action format |
russ |
|
medium |
defect |
rich |
08/11/08 |
| #1019 |
note range select bug in firefox 3.0 |
russ |
|
medium |
defect |
josowski |
08/27/08 |
| #1051 |
improve feedCache invalidation |
russ |
|
medium |
task |
rich |
11/06/08 |
| #1088 |
get rid of PLoSJournals override directory, use default journal instead |
russ |
0.9.3_rc2 |
medium |
enhancement |
dragisak |
01/28/09 |
| #1116 |
Change author e-mail to comply with NLM DTD 2.3 |
rich |
|
medium |
enhancement |
rich |
02/13/09 |
| #1140 |
Mulgara query returns UnhandledException Error |
rich |
|
medium |
defect |
dragisak |
03/10/09 |
| #1142 |
prepare-sip sax error |
russ |
|
medium |
defect |
rich |
03/12/09 |
| #1143 |
prepare-sip creates a bad MANIFEST.xml |
russ |
|
medium |
defect |
npeterson |
03/12/09 |
| #1158 |
IE6 - Advanced search form date range calendar position is wrong |
stoomey |
|
medium |
clarification |
josowski |
03/14/09 |
| #1226 |
r7512 adds links that don't point to a valid destination |
russ |
|
medium |
defect |
rich |
03/24/09 |
| #1227 |
r7512 adds absolute pathed URLs that don't work in a build |
russ |
|
medium |
defect |
rich |
03/24/09 |
| #1230 |
Adding note to URI in figure legend causes incorrect placement |
npeterson |
0.9.3_rc2 |
medium |
clarification |
josowski |
03/25/09 |
| #1249 |
Search on article abstract does not find expected results |
rich |
|
medium |
defect |
ronald |
03/30/09 |
| #402 |
Redesign of RA abstract and summary sections |
rich |
|
low |
enhancement |
stoomey |
06/18/07 |
| #492 |
should configure struts2 http (and https) port properties |
stevec |
None |
low |
enhancement |
dragisak |
07/19/07 |
| #512 |
Publishing Application does not create deceased footnote when <contrib> element has deceased="yes" attribute |
russ |
None |
low |
enhancement |
dragisak |
07/30/07 |
| #567 |
add 'delete' button to editAnnotation page |
russ |
|
low |
enhancement |
wtoconnor |
08/17/07 |
| #618 |
make article URL human friendly - no escaped characters and as short as possible |
russ |
|
low |
enhancement |
rich |
08/28/07 |
| #719 |
dynamic title for browseIssue |
russ |
|
low |
task |
wtoconnor * |
12/14/07 |
| #741 |
Struts 2 URLHelper bug |
rich |
|
low |
defect |
dragisak |
01/02/08 |
| #746 |
fix lazy loading browse cache without losing related performance gains |
russ |
|
low |
enhancement |
dragisak |
01/08/08 |
| #785 |
Migrate Formal Correction Header HTML markup assembly from javascript to viewnlm-v2.xsl |
jkirton |
0.9.3_rc2 |
low |
task |
josowski |
02/13/08 |
| #932 |
Roll back r5648 after move to JDK 1.6 |
amit |
|
low |
defect |
|
05/06/08 |
| #981 |
'see all ratings' needs paging |
pradeep |
|
low |
enhancement |
stoomey * |
07/08/08 |
| #1020 |
when editing a user through the admin pages, user cache is not cleared for logged in user |
russ |
|
low |
defect |
rich |
08/29/08 |
| #1078 |
Formal correction text overlaps with list number |
rich |
|
low |
defect |
josowski |
12/31/08 |
| #1127 |
freemarker.journal.page.title configuration does not propagate from default journal to other journals |
russ |
0.9.3_rc2 |
low |
defect |
rich |
02/23/09 |
| #1132 |
add ttl and set eternal false for some caches |
russ |
0.9.3_rc2 |
low |
clarification |
russ |
02/26/09 |
| #1135 |
ambra hangs when multiple ambras are in use on the same stack |
russ |
0.9.3_rc2 |
low |
clarification |
npeterson |
03/02/09 |
| #1200 |
article display messed up in topazproject plos templates |
ronald |
0.9.3_rc2 |
low |
clarification |
dragisak |
03/18/09 |
| #1203 |
Deletion of an Article does not update Issues list of articles. |
wtoconnor |
|
low |
enhancement |
wtoconnor |
03/19/09 |
| #1213 |
delete volume without deleting issues |
npeterson |
|
low |
defect |
wtoconnor |
03/20/09 |
| #1221 |
adminTop annotation links don't respect journal context |
russ |
|
low |
defect |
rich |
03/23/09 |
| #1222 |
editAnnotation action doesn't work in edge case |
russ |
|
low |
defect |
rich |
03/23/09 |
| #1241 |
Competing Interest Statement Radio button text |
josowski |
|
low |
enhancement |
josowski |
03/26/09 |
| #1291 |
Wrong selection error in Authors list and References list |
npeterson |
0.9.3_rc2 |
low |
defect |
josowski |
04/29/09 |
| #89 |
Prevent as far as possible automated registration of users. |
amit |
None |
unassigned |
task |
rich |
07/25/06 |
| #124 |
Write a new alert service |
ebrown |
None |
unassigned |
defect |
dragisak |
08/11/06 |
| #145 |
Implement profile access-control tests |
ronald |
|
unassigned |
defect |
dragisak |
08/26/06 |
| #159 |
xmlns(x=foo) is broken in xpointer lib |
pradeep |
None |
unassigned |
defect |
rich |
09/08/06 |
| #182 |
CAS email lookup service needs to be secured |
stevec |
None |
unassigned |
defect |
rich |
10/02/06 |
| #225 |
Support different languages in search |
ebrown |
None |
unassigned |
defect |
rich |
11/27/06 |
| #516 |
update XSL file to 2.0 |
stevec |
None |
unassigned |
enhancement |
rich |
07/31/07 |
| #781 |
findArticle.action constructs invalid pubmed search URLs in some cases |
russ |
|
unassigned |
defect |
ssterling |
02/07/08 |
| #871 |
Admin interface to change a user's password |
russ |
|
unassigned |
enhancement |
ssterling |
03/25/08 |
| #872 |
discussion thread: too many RE:'s |
russ |
|
unassigned |
enhancement |
ssterling |
03/25/08 |
| #889 |
allow admin to set volume and issue of formal correction note |
russ |
0.9.3_rc2 |
unassigned |
enhancement |
dragisak |
04/02/08 |
| #899 |
extend DOI resolver to handle supplementary-material |
rich |
|
unassigned |
enhancement |
rich |
04/04/08 |
| #985 |
it is impossible to remove all issues from a volume |
russ |
|
unassigned |
defect |
rich |
07/09/08 |
| #987 |
Annotation display messed up |
ronald |
0.9.3_rc2 |
unassigned |
defect |
josowski |
07/17/08 |
| #1009 |
add PMC article-type to extended feed |
russ |
|
unassigned |
task |
wtoconnor |
08/12/08 |
| #1015 |
include issn in extended feed |
russ |
|
unassigned |
task |
wtoconnor |
08/20/08 |
| #1025 |
remove need for freemarker config in defaults.xml |
russ |
0.9.3_rc2 |
unassigned |
task |
dragisak |
09/11/08 |
| #1042 |
Tombstone Annotations, Replies and Ratings |
pradeep |
|
unassigned |
task |
dragisak |
10/23/08 |
| #1043 |
Modification of annotations should result in creation of superseded versions. |
pradeep |
|
unassigned |
task |
dragisak |
10/23/08 |
| #1064 |
prepare-sip: better handling of tar.gz packages |
russ |
|
unassigned |
enhancement |
pradeep |
12/08/08 |
| #1077 |
CrossRef XSL: if no object-id, don't include component |
susanne |
|
unassigned |
defect |
dragisak |
12/31/08 |
| #1079 |
article_content.ftl DOI Resolver Link |
josowski |
|
unassigned |
task |
|
01/02/09 |
| #1080 |
article_content.ftl docURL Setting |
josowski |
|
unassigned |
task |
|
01/02/09 |
| #1081 |
Sending abstract to Digg.com in artle_content.ftl |
josowski |
|
unassigned |
task |
|
01/02/09 |
| #1091 |
feed cache keys are not invalidated correctly on article publish |
russ |
|
unassigned |
defect |
rich |
02/02/09 |
| #1093 |
transient error viewing annotations |
russ |
|
unassigned |
defect |
rich |
02/02/09 |
| #1123 |
genericize prepare-sip |
russ |
|
unassigned |
task |
rich |
02/18/09 |
| #1238 |
favicon URL in feed is bad |
russ |
|
unassigned |
defect |
rich |
03/25/09 |
| #1239 |
get rid of config.ambra.platform.cisStartDate |
russ |
|
unassigned |
task |
rich |
03/25/09 |
| #1242 |
Annotation window positioning after error |
josowski |
|
unassigned |
defect |
josowski |
03/26/09 |
| #1252 |
track outgoing links with google analytics |
russ |
|
unassigned |
enhancement |
rich |
03/30/09 |
| #1253 |
improve validation in prepare-sip |
russ |
|
unassigned |
enhancement |
rich |
03/30/09 |
| #1259 |
Google Scholar link returning incorrect result set |
npeterson |
0.9.3_rc2 |
unassigned |
defect |
josowski |
04/06/09 |
| #1260 |
Multiple Scopus Citations in Cited By Links |
npeterson |
0.9.3_rc2 |
unassigned |
defect |
josowski * |
04/06/09 |
| #1278 |
change author list format in extended feed |
russ |
0.9.3_rc2 |
unassigned |
task |
npeterson |
04/28/09 |
| #1298 |
Cannot access install scripts for ambra |
clipo |
0.9.3_rc2 |
unassigned |
defect |
npeterson |
05/01/09 |
| #1301 |
removing crosspubbed article doesn't clean up after itself |
russ |
|
unassigned |
defect |
npeterson |
05/05/09 |
| #1302 |
Filter has not been registered with the session-factory |
ssterling |
0.9.3_rc2 |
unassigned |
defect |
dragisak |
05/06/09 |
| #1306 |
test |
josowski |
|
unassigned |
defect |
dragisak |
05/14/09 |
| #1307 |
Test |
josowski |
|
unassigned |
defect |
dragisak |
05/21/09 |
| #1310 |
Change search OQL to make queries faster |
ssterling |
|
unassigned |
defect |
dragisak |
08/12/09 |
